WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032699 Gene Name  Cbr-xbx-1
Sequence Name  ? CBG11597 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in intraciliary retrograde transport and intraciliary transport involved in cilium assembly. Predicted to be part of cytoplasmic dynein complex. Is an ortholog of C. elegans xbx-1. In C. elegans, xbx-1 is involved in intraciliary retrograde transport and non-motile cilium assembly. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11597.1 CBG11597.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11597 CBG11597   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-xbx-1, AAATCATATTCGATCAAAGAGAGATCGAGAGGCTGCCGAGGCTCGCGCGGCTGAAAGAAT, WBGene00032699   Expr1059236 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG11598, CCCGTCCAATGAATCCAGAGGAGTTAAGACGTGCAAATTATCCTGCAAAATATGACGAGA, WBGene00032700   Expr1060803 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region