WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032811 Gene Name  Cbr-cdh-12
Sequence Name  ? CBG11734 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Is an ortholog of C. elegans cdh-12. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11734b.1 CBG11734b.1   [unknown]
Transcript:CBG11734a.1 CBG11734a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11734b CBG11734b   [unknown]
CDS:CBG11734a CBG11734a   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00013637

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in Cbr-htz-1(gu167) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-htz-1(gu167)_downregulated

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cdh-12, GAGTTTTCGAATAGTGTCCGTGAGAGACCATCGCTTCTTCAAAGTGCAATTCAGAGACAA, WBGene00032811   Expr1059621 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG11732, GTGCTCTTTGAGAACAGTGATTCCGGAGAACTCGCCAAAGGGAACGAAAGTGGCACAATT, WBGene00032809   Expr1060655 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG11733, AGGAAGTGGTTAAAGTGGCAAAAGTTCCAGTTGAGATATTTGTGTTGGGAGGAGGAGTGG, WBGene00032810   Expr1053984 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region