WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032812 Gene Name  CBG11735
Sequence Name  ? CBG11735 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable kinase activity. Predicted to be involved in inositol phosphate biosynthetic process. Is an ortholog of C. elegans Y22D7AR.6. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11735.1 CBG11735.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11735 CBG11735   [unknown]

0 RNAi Result

26 Allele

Public Name
cbp40164
cbp40165
cbp40166
cbp40167
cbp40162
cbp40163
cbp40168
cbp40169
cbp40170
cbp40161
WBVar00117470
WBVar00117472
WBVar00117471
WBVar00117478
WBVar00117477
WBVar00117479
WBVar00117474
WBVar00117473
WBVar00117476
WBVar00117475
WBVar00117467
WBVar00117466
WBVar00117469
WBVar00117468
WBVar00117465
WBVar00117480

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Heat shock: 34C 30min. Transcripts that showed significantly increased expression in L2 larva stage C. briggsae animals after incubated in a 34C water bath for 30min. DESeq2 v 1.18.1, fold change > 2, FDR < 0.01. WBPaper00058955:heatshock_upregulated_CBG

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG11735, AAGGAAAAGATGAGGGATCAATTTTGGGTCTGGACACTTTGCTAGGCATTGTGAAGCGCT, WBGene00032812   Expr1056819 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region