WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032918 Gene Name  Cbr-lars-2
Sequence Name  ? CBG11879 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity; aminoacyl-tRNA editing activity; and leucine-tRNA ligase activity. Predicted to be involved in leucyl-tRNA aminoacylation. Is an ortholog of C. elegans lars-2. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11879.1 CBG11879.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11879 CBG11879   [unknown]

0 RNAi Result

50 Allele

Public Name
WBVar00117988
WBVar00117987
WBVar00117989
WBVar00117995
WBVar00117994
WBVar00117997
WBVar00117996
WBVar00117991
WBVar00117990
WBVar00117993
WBVar00117992
WBVar00117977
WBVar00117979
WBVar00117978
WBVar00117984
WBVar00117983
WBVar00117986
WBVar00117985
WBVar00117980
WBVar00117982
WBVar00117981
WBVar00117999
WBVar00117998
WBVar00118000
WBVar00118006
WBVar00118005
WBVar00118008
WBVar00118007
WBVar00118002
WBVar00118001

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-lars-2, CTGATGATTGACGGCGTCAGTGGAGGACGTCCAAGTGTTGGAAGACAGAAAATTGAAAAT, WBGene00032918   Expr1056092 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

7 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  enables
  enables

0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region