WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032961 Gene Name  Cbr-unc-15
Sequence Name  ? CBG11932 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be part of myosin complex. Is an ortholog of C. elegans unc-15. In C. elegans, unc-15 is involved in several processes, including positive regulation of ovulation; positive regulation of sarcomere organization; and skeletal muscle myosin thick filament assembly. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11932.1 CBG11932.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11932 CBG11932   [unknown]

0 RNAi Result

21 Allele

Public Name
WBVar00118049
WBVar00118048
WBVar00118064
WBVar00118063
WBVar00118066
WBVar00118065
WBVar00118060
WBVar00118062
WBVar00118061
WBVar00118068
WBVar00118067
WBVar00118053
WBVar00118052
WBVar00118055
WBVar00118054
WBVar00118051
WBVar00118050
WBVar00118057
WBVar00118056
WBVar00118059
WBVar00118058

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly increased at L4 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L4_vs_embryo_upregulated
  C.briggsae proteins that showed significantly increased at L1 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L1_vs_embryo_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-15, AAGCACTTGTACGAGAAGGCTGTCGAGCAGAAGGAGGCCCTTGCTCGCGAGAACAAAAAG, WBGene00032961   Expr1051402 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  part_of

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region