WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033201 Gene Name  Cbr-aha-1
Sequence Name  ? CBG12219 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA-binding transcription factor activity and protein dimerization activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription regulator complex. Is an ortholog of C. elegans aha-1. In C. elegans, aha-1 is involved in several processes, including determination of adult lifespan; positive regulation of transcription by RNA polymerase II; and social behavior. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12219.1 CBG12219.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12219 CBG12219   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00015774

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-aha-1, AAAAACGCTCCTCCTCAAGGAATTAATGCACCAGCATCCTCATGTTTGGTAGCCATTGCC, WBGene00033201   Expr1050156 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in
  located_in
  part_of

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in
  located_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region