WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033495 Gene Name  Cbr-fars-1
Sequence Name  ? CBG12564 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity; phenylalanine-tRNA ligase activity; and tRNA binding activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Is an ortholog of C. elegans fars-1. In C. elegans, fars-1 is involved in translation. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12564b.1 CBG12564b.1   [unknown]
Transcript:CBG12564a.1 CBG12564a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12564a CBG12564a   [unknown]
CDS:CBG12564b CBG12564b   [unknown]

0 RNAi Result

2 Allele

Public Name
WBVar00118646
WBVar00118645

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-fars-1, GCAATTCAAGAAGTACAATTTCGAATCACTGGGAGTTGTTCCATCTTCGGGACATCTCCA, WBGene00033495   Expr1058371 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  involved_in
  involved_in
  located_in
  enables
  enables
  enables
  enables
  enables

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  involved_in
  located_in
  enables
  enables
  enables
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region