WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033715 Gene Name  Cbr-daf-16
Sequence Name  ? CBG12825 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA-binding transcription factor activity and sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans daf-16. In C. elegans, daf-16 is involved in several processes, including regulation of dauer larval development; regulation of metabolic process; and response to stress. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12825d.1 CBG12825d.1   [unknown]
Transcript:CBG12825e.1 CBG12825e.1   [unknown]
Transcript:CBG12825a.1 CBG12825a.1   [unknown]
Transcript:CBG12825b.1 CBG12825b.1   [unknown]
Transcript:CBG12825c.1 CBG12825c.1   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12825b CBG12825b   [unknown]
CDS:CBG12825c CBG12825c   [unknown]
CDS:CBG12825d CBG12825d   [unknown]
CDS:CBG12825e CBG12825e   [unknown]
CDS:CBG12825a CBG12825a   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00119033
WBVar00119031
WBVar00119032
WBVar00119030
WBVar00119028
WBVar00119029
WBVar00119026
WBVar00119027
WBVar00119024
WBVar00119025

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-daf-16, GAATATTCCAAATGACTTGGTCGATCGGACCGATCAGATGCGCATTGATAACGGTCCATT, WBGene00033715   Expr1065192 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG12823, TCGTTCGGTGGCACTACTCAGTATTCTCAACAGTTTATGCAACGGAAAATAATCGGTCGC, WBGene00033714   Expr1056000 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables
  enables

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region