WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033782 Gene Name  Cbr-sec-23
Sequence Name  ? CBG12918 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable zinc ion binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intracellular protein transport. Predicted to be part of COPII vesicle coat. Is an ortholog of C. elegans sec-23. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12918.1 CBG12918.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12918 CBG12918   [unknown]

0 RNAi Result

9 Allele

Public Name
WBVar00014812
WBVar00014807
WBVar00014802
WBVar00014787
WBVar00014792
WBVar00014777
WBVar00014782
WBVar00014772
WBVar00014797

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-sec-23, TCACAAGCGCGCTTCTTGTTGTCCAAAGTCAATCCTTCGTTGACGCACAATAATCCGTAT, WBGene00033782   Expr1064692 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  part_of

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region