WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034037 Gene Name  Cbr-crh-1
Sequence Name  ? CBG13248 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of C. elegans crh-1. In C. elegans, crh-1 is involved in several processes, including dauer entry; determination of adult lifespan; and positive regulation of transcription by RNA polymerase II. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13248f.1 CBG13248f.1   [unknown]
Transcript:CBG13248e.1 CBG13248e.1   [unknown]
Transcript:CBG13248d.1 CBG13248d.1   [unknown]
Transcript:CBG13248c.1 CBG13248c.1   [unknown]
Transcript:CBG13248b.1 CBG13248b.1   [unknown]
Transcript:CBG13248a.1 CBG13248a.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13248a CBG13248a   [unknown]
CDS:CBG13248b CBG13248b   [unknown]
CDS:CBG13248c CBG13248c   [unknown]
CDS:CBG13248d CBG13248d   [unknown]
CDS:CBG13248e CBG13248e   [unknown]
CDS:CBG13248f CBG13248f   [unknown]

0 RNAi Result

1 Allele

Public Name
cbp40196

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-crh-1, TGTCTTGAAAATCGTGTATCGGTGCTGGAAAACCAGAATAAGGCATTGATCGAAGAGCTG, WBGene00034037   Expr1068962 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region