WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034153 Gene Name  Cbr-let-268
Sequence Name  ? CBG13377 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable L-ascorbic acid binding activity; iron ion binding activity; and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen. Is an ortholog of C. elegans let-268. In C. elegans, let-268 is involved in collagen biosynthetic process and protein glycosylation. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13377.1 CBG13377.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13377 CBG13377   [unknown]

0 RNAi Result

9 Allele

Public Name
WBVar00137692
WBVar00137694
WBVar00137693
WBVar00137695
WBVar00119658
WBVar00119659
WBVar00119660
WBVar00119661
WBVar00119662

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-let-268, GAAGGTCTCGCCACGACAAAGGGTACCAGATATATTATGGTGTCGTTTATCAATCCATAA, WBGene00034153   Expr1061150 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region