WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034233 Gene Name  Cbr-camt-1
Sequence Name  ? CBG13474 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA binding activity. Is an ortholog of C. elegans camt-1. In C. elegans, camt-1 is involved in positive chemotaxis; positive regulation of transcription by RNA polymerase II; and response to oxygen levels. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13474a.1 CBG13474a.1   [unknown]
Transcript:CBG13474b.1 CBG13474b.1   [unknown]
Transcript:CBG13474c.1 CBG13474c.1   [unknown]
Transcript:CBG13474d.1 CBG13474d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13474b CBG13474b   [unknown]
CDS:CBG13474a CBG13474a   [unknown]
CDS:CBG13474d CBG13474d   [unknown]
CDS:CBG13474c CBG13474c   [unknown]

0 RNAi Result

30 Allele

Public Name
WBVar00119907
WBVar00119905
WBVar00119906
WBVar00119903
WBVar00119904
WBVar00119901
WBVar00119902
WBVar00119900
WBVar00119878
WBVar00119891
WBVar00119892
WBVar00119890
WBVar00119899
WBVar00119897
WBVar00119898
WBVar00119895
WBVar00119896
WBVar00119893
WBVar00119894
WBVar00119879
WBVar00119880
WBVar00119881
WBVar00119888
WBVar00119889
WBVar00119886
WBVar00119887
WBVar00119884
WBVar00119885
WBVar00119882
WBVar00119883

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG13474, AGATTATTGAGGCGTTGCCGGAGAGGATAAAAGGAAATTCGGAAGTTTCGTATCGAGATG, WBGene00034233   Expr1053739 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region