WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034246 Gene Name  Cbr-twk-2
Sequence Name  ? CBG13488 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans twk-2. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

7 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13488c.1 CBG13488c.1   [unknown]
Transcript:CBG13488d.1 CBG13488d.1   [unknown]
Transcript:CBG13488e.1 CBG13488e.1   [unknown]
Transcript:CBG13488f.1 CBG13488f.1   [unknown]
Transcript:CBG13488g.1 CBG13488g.1   [unknown]
Transcript:CBG13488a.1 CBG13488a.1   [unknown]
Transcript:CBG13488b.1 CBG13488b.1   [unknown]
 

Other

7 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13488a CBG13488a   [unknown]
CDS:CBG13488c CBG13488c   [unknown]
CDS:CBG13488b CBG13488b   [unknown]
CDS:CBG13488e CBG13488e   [unknown]
CDS:CBG13488d CBG13488d   [unknown]
CDS:CBG13488g CBG13488g   [unknown]
CDS:CBG13488f CBG13488f   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00108718
WBVar00108717
WBVar00108716
WBVar00108715

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG03694, CGGAAGCGGAGAAAAGAGCAAATGAAGCAGCGAGAGATCGGGATATGGAGATGGGTGGAG, WBGene00026499   Expr1059633 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG03693, TGGAGAAATGCAAAGGCAGTTGAGAAGGCGAGAGTTCAGAAGGAGTTTGATCCGAGGAGG, WBGene00026498   Expr1062255 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-twk-2, GAAGAGCCGATGGCAGTGTACGTGGAGGAAGAGAAGCGGATACCTCAAAACGATATTGAT, WBGene00034246   Expr1054269 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region