WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034747 Gene Name  Cbr-rgl-1
Sequence Name  ? CBG14158 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in small GTPase-mediated signal transduction. Is an ortholog of C. elegans rgl-1. In C. elegans, rgl-1 is involved in epidermal growth factor receptor signaling pathway and positive regulation of vulval development. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14158d.1 CBG14158d.1   [unknown]
Transcript:CBG14158a.1 CBG14158a.1   [unknown]
Transcript:CBG14158b.1 CBG14158b.1   [unknown]
Transcript:CBG14158c.1 CBG14158c.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14158b CBG14158b   [unknown]
CDS:CBG14158a CBG14158a   [unknown]
CDS:CBG14158d CBG14158d   [unknown]
CDS:CBG14158c CBG14158c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-rgl-1, CCACAAAATTCCTTTTATTTGGCTAGAGTTGGACTGGATGATGACCTCCAAAATACTGAT, WBGene00034747   Expr1059241 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region