WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034796 Gene Name  Cbr-npr-16
Sequence Name  ? CBG14230 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Is an ortholog of C. elegans npr-16. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

16 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14230c.1 CBG14230c.1   [unknown]
Transcript:CBG14230d.1 CBG14230d.1   [unknown]
Transcript:CBG14230e.1 CBG14230e.1   [unknown]
Transcript:CBG14230f.1 CBG14230f.1   [unknown]
Transcript:CBG14230a.1 CBG14230a.1   [unknown]
Transcript:CBG14230b.1 CBG14230b.1   [unknown]
Transcript:CBG14230k.1 CBG14230k.1   [unknown]
Transcript:CBG14230l.1 CBG14230l.1   [unknown]
Transcript:CBG14230m.1 CBG14230m.1   [unknown]
Transcript:CBG14230n.1 CBG14230n.1   [unknown]
Transcript:CBG14230g.1 CBG14230g.1   [unknown]
Transcript:CBG14230h.1 CBG14230h.1   [unknown]
Transcript:CBG14230i.1 CBG14230i.1   [unknown]
Transcript:CBG14230j.1 CBG14230j.1   [unknown]
Transcript:CBG14230o.1 CBG14230o.1   [unknown]
Transcript:CBG14230p.1 CBG14230p.1   [unknown]
 

Other

16 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14230p CBG14230p   [unknown]
CDS:CBG14230n CBG14230n   [unknown]
CDS:CBG14230o CBG14230o   [unknown]
CDS:CBG14230l CBG14230l   [unknown]
CDS:CBG14230m CBG14230m   [unknown]
CDS:CBG14230j CBG14230j   [unknown]
CDS:CBG14230k CBG14230k   [unknown]
CDS:CBG14230h CBG14230h   [unknown]
CDS:CBG14230i CBG14230i   [unknown]
CDS:CBG14230f CBG14230f   [unknown]
CDS:CBG14230g CBG14230g   [unknown]
CDS:CBG14230d CBG14230d   [unknown]
CDS:CBG14230e CBG14230e   [unknown]
CDS:CBG14230b CBG14230b   [unknown]
CDS:CBG14230c CBG14230c   [unknown]
CDS:CBG14230a CBG14230a   [unknown]

0 RNAi Result

7 Allele

Public Name
WBVar00017382
WBVar00017387
WBVar00017392
WBVar00121144
WBVar00121141
WBVar00121142
WBVar00121143

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-npr-16, AAAGATCTAGGTCTTCTTACCAAAGAGTTACTCGAAGTGTACAACGGGTTGTTCTTTTCC, WBGene00034796   Expr1067037 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region