WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034910 Gene Name  Cbr-paf-2
Sequence Name  ? CBG14389 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable 1-alkyl-2-acetylglycerophosphocholine esterase activity. Is an ortholog of C. elegans paf-2. In C. elegans, paf-2 is involved in lipid catabolic process and morphogenesis of embryonic epithelium. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14389.1 CBG14389.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14389 CBG14389   [unknown]

0 RNAi Result

26 Allele

Public Name
WBVar00138098
WBVar00121270
WBVar00121271
WBVar00121272
WBVar00121273
WBVar00121274
WBVar00121275
WBVar00121265
WBVar00121266
WBVar00121267
WBVar00121268
WBVar00121269
WBVar00121260
WBVar00121261
WBVar00121262
WBVar00121263
WBVar00121264
WBVar00121257
WBVar00121258
WBVar00121259
WBVar00121276
WBVar00121277
WBVar00121278
WBVar00029564
WBVar00029569
WBVar00029559

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-paf-2, AGAATGTGTCAAAGCTCTCAATGTCTTGGAGCAACTGAATCTTGGAACTGTTCCTGAGAA, WBGene00034910   Expr1061664 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region