WormMine: Gene WBGene00034982

• WormBase Gene ID: WBGene00034982
• Gene Name: Cbr-nhr-45
• Sequence Name: CBG14515
• Organism: Caenorhabditis briggsae
• Automated Description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-45.
• Biotype: SO:0001217
• Genetic Position: :±

1 Organism

• Name: Caenorhabditis briggsae
• Taxon Id: 6238

0 Synonyms

Genomics

5 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:CBG14515d.1	CBG14515d.1		[unknown]
Transcript:CBG14515c.1	CBG14515c.1		[unknown]
Transcript:CBG14515b.1	CBG14515b.1		[unknown]
Transcript:CBG14515e.1	CBG14515e.1		[unknown]
Transcript:CBG14515a.1	CBG14515a.1		[unknown]

Other

5 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:CBG14515e	CBG14515e		[unknown]
CDS:CBG14515d	CBG14515d		[unknown]
CDS:CBG14515c	CBG14515c		[unknown]
CDS:CBG14515b	CBG14515b		[unknown]
CDS:CBG14515a	CBG14515a		[unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

• WormBaseAcedbConverter
• GO Annotation data set

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in Cbr-spr-4(gu163) comparing to in AF16.	DESeq2, FDR < 0.05.	WBPaper00059178:Cbr-spr-4(gu163)_downregulated
Heat shock: 34C 30min.	Transcripts that showed significantly increased expression in L2 larva stage C. briggsae animals after incubated in a 34C water bath for 30min.	DESeq2 v 1.18.1, fold change > 2, FDR < 0.01.	WBPaper00058955:heatshock_upregulated_CBG

1 Expression Patterns

• Primary Identifier: Expr1055611
• Remark: Cbr-nhr-45, GGGAAGATAGTCAGGTGTCCAAGACGTTCAACATCTTTAAGAACGATTTCTTCTTCAGCG, WBGene00034982
• Pattern: Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012

4 GO Annotation

0 Homologues

0 Locations

4 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

• Name: gene

0 Strains

0 Upstream Intergenic Region