WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035248 Gene Name  Cbr-gcy-28
Sequence Name  ? CBG14865 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable protein kinase activity. Predicted to be involved in cyclic nucleotide biosynthetic process and intracellular signal transduction. Predicted to be located in membrane. Is an ortholog of C. elegans gcy-28. In C. elegans, gcy-28 is involved in chemotaxis; olfactory behavior; and sensory perception. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14865c.1 CBG14865c.1   [unknown]
Transcript:CBG14865b.1 CBG14865b.1   [unknown]
Transcript:CBG14865a.1 CBG14865a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14865a CBG14865a   [unknown]
CDS:CBG14865b CBG14865b   [unknown]
CDS:CBG14865c CBG14865c   [unknown]

0 RNAi Result

17 Allele

Public Name
WBVar00001619
WBVar00121770
WBVar00121782
WBVar00121783
WBVar00121784
WBVar00121785
WBVar00121780
WBVar00121781
WBVar00121771
WBVar00121772
WBVar00121773
WBVar00121774
WBVar00121775
WBVar00121776
WBVar00121777
WBVar00121778
WBVar00121779

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-gcy-28, GATGAAGGGCAAAGGAATGCAGACGACGTACTGGCTGCGTGGCTACAAGGACGTCGAGAT, WBGene00035248   Expr1051171 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG14864, GATGAGGATTTGGTGATAGAACGGGAGACGTTTAAGCAATGGTTGAGAGAGATTTCAATG, WBGene00035247   Expr1064311 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG25194, TTTTAGAATATCCTCCAAATCAGTTTTCATGTGTTTTTTGTTTCGATCCACCATCTTCTT, WBGene00086608   Expr1052679 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  involved_in
  involved_in
  located_in
  enables
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  involved_in
  located_in
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region