WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035347 Gene Name  Cbr-cogc-1
Sequence Name  ? CBG14980 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to be part of Golgi transport complex. Is an ortholog of C. elegans cogc-1. In C. elegans, cogc-1 is involved in several processes, including gonad morphogenesis; regulation of cell migration; and vulval development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14980b.1 CBG14980b.1   [unknown]
Transcript:CBG14980a.1 CBG14980a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14980a CBG14980a   [unknown]
CDS:CBG14980b CBG14980b   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00001604
WBVar00001594
WBVar00001599
WBVar00121945
WBVar00121946
WBVar00121947
WBVar00121948
WBVar00121949
WBVar00121950
WBVar00121951
WBVar00121952
WBVar00121953
WBVar00121954
WBVar00121955

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cogc-1, CTCTCCTCGACAAAGACTCACAACGCATAACGTCTCTCAATCAACGACTCCATGCAATAA, WBGene00035347   Expr1070015 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG25217, AATTCAAGATTTATCTGTGCACATTGAGCAACCTTCTCGTATTCCAACAGTTCCCAGACT, WBGene00086631   Expr1054743 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region