WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035410 Gene Name  CBG15066
Sequence Name  ? CBG15066 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be located in Golgi membrane. Is an ortholog of C. elegans Y11D7A.9. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG15066.1 CBG15066.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG15066 CBG15066   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00122100
WBVar00122110
WBVar00122102
WBVar00122101
WBVar00122104
WBVar00122103
WBVar00122106
WBVar00122105
WBVar00122108
WBVar00122107
WBVar00122109

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in Cbr-htz-1(gu167) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-htz-1(gu167)_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG15066, CCTGAATATTTGTTTCCATGGATGTGCATTTTTCGATATTCGATATAAGGTTACGTTTAG, WBGene00035410   Expr1061600 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  located_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region