WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036040 Gene Name  Cbr-ptr-5
Sequence Name  ? CBG15941 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be located in membrane. Is an ortholog of C. elegans ptr-5. In C. elegans, ptr-5 is involved in molting cycle. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG15941.1 CBG15941.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG15941 CBG15941   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00047737
WBVar00020122
WBVar00020107
WBVar00020157
WBVar00020142
WBVar00020127
WBVar00020112
WBVar00020147
WBVar00020132
WBVar00020117
WBVar00020152
WBVar00020137

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ptr-5, TGTGCCACGCCGTGACAGTACCAATAGCATTGAAATGCAGAAGATGGAGCGGAAAGATCC, WBGene00036040   Expr1067357 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  located_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region