WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036112 Gene Name  CBG16039
Sequence Name  ? CBG16039 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in protein homooligomerization. Is an ortholog of C. elegans F22E5.6; C40A11.7; and C40A11.6. In C. elegans, B0281.5 is involved in monoatomic ion transport and protein folding. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16039.1 CBG16039.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16039 CBG16039   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00020442
WBVar00020427
WBVar00020412
WBVar00020447
WBVar00020432
WBVar00020417
WBVar00020402
WBVar00020452
WBVar00020437
WBVar00020422
WBVar00020407
WBVar00020457

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG16039, TACCCAGAGCTCTGTGAGACACCAGGAATGGCAATGGACGCTCTATAAAAAGGATTACAG, WBGene00036112   Expr1052870 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region