WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036183 Gene Name  Cbr-pkc-2
Sequence Name  ? CBG16150 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity; diacylglycerol-dependent serine/threonine kinase activity; and zinc ion binding activity. Is an ortholog of C. elegans pkc-2. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

9 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16150h.1 CBG16150h.1   [unknown]
Transcript:CBG16150i.1 CBG16150i.1   [unknown]
Transcript:CBG16150f.1 CBG16150f.1   [unknown]
Transcript:CBG16150g.1 CBG16150g.1   [unknown]
Transcript:CBG16150d.1 CBG16150d.1   [unknown]
Transcript:CBG16150c.1 CBG16150c.1   [unknown]
Transcript:CBG16150e.1 CBG16150e.1   [unknown]
Transcript:CBG16150a.1 CBG16150a.1   [unknown]
Transcript:CBG16150b.1 CBG16150b.1   [unknown]
 

Other

9 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16150h CBG16150h   [unknown]
CDS:CBG16150g CBG16150g   [unknown]
CDS:CBG16150i CBG16150i   [unknown]
CDS:CBG16150b CBG16150b   [unknown]
CDS:CBG16150a CBG16150a   [unknown]
CDS:CBG16150d CBG16150d   [unknown]
CDS:CBG16150c CBG16150c   [unknown]
CDS:CBG16150f CBG16150f   [unknown]
CDS:CBG16150e CBG16150e   [unknown]

0 RNAi Result

23 Allele

Public Name
WBVar00055289
WBVar00055259
WBVar00055254
WBVar00055264
WBVar00055249
WBVar00055244
WBVar00055279
WBVar00055284
WBVar00055269
WBVar00055274
WBVar00055214
WBVar00055219
WBVar00055239
WBVar00055234
WBVar00055224
WBVar00055229
WBVar00123630
WBVar00023364
WBVar00023369
WBVar00023374
WBVar00023379
WBVar00020532
WBVar00023384

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-pkc-2, GAAAATCTCAAGGGCGACGAGTTCATCAACTTCTCATTCGTCAATCCGTACTACGTCAAG, WBGene00036183   Expr1060337 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG16151, GAAGGCAAAAAAGCGCGAACCAATGGATAGTGCCGAGCGTCGACGATCCGAGACCGATAT, WBGene00036184   Expr1059202 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region