WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036928 Gene Name  Cbr-pkn-1
Sequence Name  ? CBG17230 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to be involved in signal transduction. Is an ortholog of C. elegans pkn-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG17230b.1 CBG17230b.1   [unknown]
Transcript:CBG17230c.1 CBG17230c.1   [unknown]
Transcript:CBG17230d.1 CBG17230d.1   [unknown]
Transcript:CBG17230a.1 CBG17230a.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG17230a CBG17230a   [unknown]
CDS:CBG17230b CBG17230b   [unknown]
CDS:CBG17230c CBG17230c   [unknown]
CDS:CBG17230d CBG17230d   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-pkn-1, GAAAAGCGTCTCGGCTATGGAGAACGTGATGCTGAGGACATCAAAATCCAGCGCTTCTTC, WBGene00036928   Expr1068073 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region