WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00037335 Gene Name  CBG17800
Sequence Name  ? CBG17800 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable galactoside 2-alpha-L-fucosyltransferase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be located in membrane. Is an ortholog of C. elegans EGAP9.3 and F41D3.6. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG17800.1 CBG17800.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG17800 CBG17800   [unknown]

0 RNAi Result

30 Allele

Public Name
WBVar00125800
WBVar00125803
WBVar00125804
WBVar00125801
WBVar00125802
WBVar00125807
WBVar00125808
WBVar00125805
WBVar00125806
WBVar00125809
WBVar00125799
WBVar00125797
WBVar00125798
WBVar00125791
WBVar00125792
WBVar00125790
WBVar00125795
WBVar00125796
WBVar00125793
WBVar00125794
WBVar00125788
WBVar00125789
WBVar00125786
WBVar00125787
WBVar00125780
WBVar00125781
WBVar00125784
WBVar00125785
WBVar00125782
WBVar00125783

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG17800, TCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGA, WBGene00037335   Expr1065114 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region