WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00037540 Gene Name  Cbr-imph-1
Sequence Name  ? CBG18043 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable RNA binding activity. Is an ortholog of C. elegans imph-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG18043b.1 CBG18043b.1   [unknown]
Transcript:CBG18043a.1 CBG18043a.1   [unknown]
Transcript:CBG18043c.1 CBG18043c.1   [unknown]
Transcript:CBG18043d.1 CBG18043d.1   [unknown]
Transcript:CBG18043e.1 CBG18043e.1   [unknown]
Transcript:CBG18043e.2 CBG18043e.2   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG18043e CBG18043e   [unknown]
CDS:CBG18043d CBG18043d   [unknown]
CDS:CBG18043a CBG18043a   [unknown]
CDS:CBG18043c CBG18043c   [unknown]
CDS:CBG18043b CBG18043b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG18043, TGTCGATGGAGGTCCATACAATGTGAAATTGCGTACAGAAGTTTGTGTTCCGACAAAGAT, WBGene00037540   Expr1063805 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region