WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00037682 Gene Name  Cbr-kvs-4
Sequence Name  ? CBG18227 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transport; protein homooligomerization; and transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Is an ortholog of C. elegans kvs-4. In C. elegans, kvs-4 is involved in long-term memory. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG18227a.1 CBG18227a.1   [unknown]
Transcript:CBG18227c.1 CBG18227c.1   [unknown]
Transcript:CBG18227b.1 CBG18227b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG18227b CBG18227b   [unknown]
CDS:CBG18227c CBG18227c   [unknown]
CDS:CBG18227a CBG18227a   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00138709
WBVar00138710
WBVar00138712
WBVar00138711

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG18227, TTTGGAATCTCTACGGAGCAGCTGAGAGATCTCAAGGGAGCATTCCTTGTAATCAGAATT, WBGene00037682   Expr1058391 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG18229, GGACAATGGAAGTTTCGACTACATCGATATGGTATCACAAAACTCGCTCATTTTGGACAG, WBGene00037683   Expr1058344 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in
  located_in
  part_of

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in
  located_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region