WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038394 Gene Name  Cbr-pfk-1.2
Sequence Name  ? CBG19122 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable 6-phosphofructokinase activity and ATP binding activity. Predicted to be involved in fructose 6-phosphate metabolic process and glycolytic process. Predicted to be located in cytoplasm. Is an ortholog of C. elegans pfk-1.2. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19122.1 CBG19122.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19122 CBG19122   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00026302
WBVar00026307
WBVar00026297

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG19122, AAATGGGAAAACGAGATTGTTGTGTTATTGGGTTGAGAGGGAGCAGTTTGAGATATGTTC, WBGene00038394   Expr1069957 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  located_in
  enables
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  located_in
  enables
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region