WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038395 Gene Name  Cbr-twk-11
Sequence Name  ? CBG19123 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans twk-11. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19123c.1 CBG19123c.1   [unknown]
Transcript:CBG19123a.1 CBG19123a.1   [unknown]
Transcript:CBG19123b.1 CBG19123b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19123a CBG19123a   [unknown]
CDS:CBG19123b CBG19123b   [unknown]
CDS:CBG19123c CBG19123c   [unknown]

0 RNAi Result

13 Allele

Public Name
WBVar00127237
WBVar00127236
WBVar00127235
WBVar00127240
WBVar00127244
WBVar00127243
WBVar00127242
WBVar00127241
WBVar00127247
WBVar00127246
WBVar00127245
WBVar00127239
WBVar00127238

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-twk-11, GGTTGTGGCCAGAGAGAGCAAGTCCATTTGCGTCGAGGCACAGTTCATTAAAGAGAAGGA, WBGene00038395   Expr1066887 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region