WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038477 Gene Name  CBG19219
Sequence Name  ? CBG19219 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable oxidoreductase activity and small molecule binding activity. Is an ortholog of C. elegans F15E6.6 and gad-3. In C. elegans, gad-3 is involved in IRE1-mediated unfolded protein response. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19219.1 CBG19219.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19219 CBG19219   [unknown]

0 RNAi Result

9 Allele

Public Name
WBVar00127307
WBVar00127306
WBVar00127305
WBVar00127304
WBVar00127303
WBVar00025709
WBVar00025714
WBVar00025719
WBVar00025704

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG19219, GACGCCCAATCGCCAATTATTTCAACGAAAGAGCCATTACAGGGGAGGCTCTTTATGTCA, WBGene00038477   Expr1059582 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
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0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
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0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region