WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038632 Gene Name  Cbr-egl-47
Sequence Name  ? CBG19400 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in sensory perception of taste. Predicted to be located in membrane. Is an ortholog of C. elegans egl-47. In C. elegans, egl-47 is involved in G protein-coupled receptor signaling pathway and egg-laying behavior. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19400a.1 CBG19400a.1   [unknown]
Transcript:CBG19400b.1 CBG19400b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19400a CBG19400a   [unknown]
CDS:CBG19400b CBG19400b   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00138951
WBVar00057434
WBVar00057439
WBVar00057429
WBVar00057424
WBVar00057444
WBVar00057449
WBVar00057419
WBVar00057414
WBVar00057409
WBVar00057404
WBVar00127425
WBVar00127424
WBVar00127423

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG19396, TGGAGGAAGAGGACGAGGAAATGGGACGTTCTAATGGAAAAATGTACTCGAATCGACACA, WBGene00038629   Expr1056591 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-egl-47, GCAGTACATGTATCAATCTGTTGGGCCGCCTATCAGGTTATCATGGCAATTCTTCATATT, WBGene00038632   Expr1069343 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region