WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038735 Gene Name  CBG19535
Sequence Name  ? CBG19535 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans sex-1. In C. elegans, sex-1 is involved in primary sex determination and regulation of gene expression. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19535.1 CBG19535.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19535 CBG19535   [unknown]

0 RNAi Result

31 Allele

Public Name
WBVar00026812
WBVar00026877
WBVar00026942
WBVar00026817
WBVar00026882
WBVar00026947
WBVar00026822
WBVar00026887
WBVar00026952
WBVar00026827
WBVar00026892
WBVar00026957
WBVar00026832
WBVar00026897
WBVar00026837
WBVar00026902
WBVar00026842
WBVar00026907
WBVar00026972
WBVar00026847
WBVar00026977
WBVar00027042
WBVar00026852
WBVar00026982
WBVar00026857
WBVar00026987
WBVar00026862
WBVar00026867
WBVar00026807
WBVar00026872

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG19535, AAATGCTCGAAAAGTCGTTCCTCGAATTCCTACGCACCGCAGCAAAACAGGGAGATTTGG, WBGene00038735   Expr1057226 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables
  enables
  enables

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region