WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038863 Gene Name  Cbr-nfx-1
Sequence Name  ? CBG19688 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA-binding transcription factor activity; nucleic acid binding activity; and zinc ion binding activity. Predicted to be located in nucleus. Is an ortholog of C. elegans nfx-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19688.1 CBG19688.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19688 CBG19688   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00050204
WBVar00050199
WBVar00050194
WBVar00050189
WBVar00050184
WBVar00127677
WBVar00127676
WBVar00127675
WBVar00127680
WBVar00127679
WBVar00127678

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tag-182, CATGACTGAGGAGGAAATCGAAGCGGCGAAGCTGATAGAAGAAGGACCAACTTGGGAAGA, WBGene00038863   Expr1059239 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region