WormMine: Gene WBGene00038897

• WormBase Gene ID: WBGene00038897
• Gene Name: CBG19727
• Sequence Name: CBG19727
• Organism: Caenorhabditis briggsae
• Automated Description: Predicted to enable protein tyrosine phosphatase activity. Is an ortholog of C. elegans F36H1.3.
• Biotype: SO:0001217
• Genetic Position: :±

1 Organism

• Name: Caenorhabditis briggsae
• Taxon Id: 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:CBG19727.1	CBG19727.1		[unknown]

Other

1 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:CBG19727	CBG19727		[unknown]

0 RNAi Result

19 Allele

• WBVar00127716
• WBVar00027612
• WBVar00027582
• WBVar00028254
• WBVar00027617
• WBVar00028259
• WBVar00027587
• WBVar00027622
• WBVar00027592
• WBVar00028264
• WBVar00027627
• WBVar00027597
• WBVar00028269
• WBVar00027567
• WBVar00028274
• WBVar00027602
• WBVar00027572
• WBVar00027607
• WBVar00027577

0 Chromosome

0 Chromosome Location

2 Data Sets

• WormBaseAcedbConverter
• GO Annotation data set

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Heat shock: 34C 30min.	Transcripts that showed significantly increased expression in L2 larva stage C. briggsae animals after incubated in a 34C water bath for 30min.	DESeq2 v 1.18.1, fold change > 2, FDR < 0.01.	WBPaper00058955:heatshock_upregulated_CBG

1 Expression Patterns

• Primary Identifier: Expr1060703
• Remark: CBG19727, TTGAGGATGCGAAACTACTGGAGGCTATTGAATTATATAAGAGACAGACGGCGGATTATG, WBGene00038897
• Pattern: Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012

2 GO Annotation

0 Homologues

0 Locations

2 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

• Name: gene

0 Strains

0 Upstream Intergenic Region