WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038962 Gene Name  Cbr-riok-2
Sequence Name  ? CBG19799 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Is an ortholog of C. elegans riok-2. In C. elegans, riok-2 is involved in nematode larval development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19799.1 CBG19799.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19799 CBG19799   [unknown]

0 RNAi Result

13 Allele

Public Name
WBVar00127809
WBVar00127808
WBVar00127807
WBVar00127813
WBVar00127812
WBVar00127811
WBVar00127810
WBVar00127814
WBVar00028414
WBVar00028419
WBVar00028424
WBVar00028399
WBVar00028404

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-riok-2, AAGAAAGAGGATTCCCAGTTCCGAAGGCTGTTGACGTTTGTAGACACTTGGTTGTAATGC, WBGene00038962   Expr1059240 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region