WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038967 Gene Name  Cbr-atg-4.1
Sequence Name  ? CBG19805 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable cysteine-type peptidase activity. Is an ortholog of C. elegans atg-4.1. In C. elegans, atg-4.1 is involved in aggrephagy and protein processing. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19805.1 CBG19805.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19805 CBG19805   [unknown]

0 RNAi Result

13 Allele

Public Name
WBVar00001409
WBVar00001404
WBVar00001414
WBVar00001364
WBVar00001359
WBVar00001354
WBVar00001394
WBVar00001399
WBVar00001369
WBVar00001034
WBVar00001039
WBVar00028429
WBVar00028434

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-atg-4.1, AGCCATATACTGGAGTTAGTATGAAAATCGAGATGAAGGAGTTTGATGATATTGGAGCGG, WBGene00038967   Expr1067815 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region