WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038974 Gene Name  Cbr-kin-1
Sequence Name  ? CBG19814 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Is an ortholog of C. elegans kin-1. In C. elegans, kin-1 is involved in positive regulation of oocyte maturation. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19814b.1 CBG19814b.1   [unknown]
Transcript:CBG19814a.1 CBG19814a.1   [unknown]
Transcript:CBG19814d.1 CBG19814d.1   [unknown]
Transcript:CBG19814c.1 CBG19814c.1   [unknown]
Transcript:CBG19814e.1 CBG19814e.1   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19814b CBG19814b   [unknown]
CDS:CBG19814a CBG19814a   [unknown]
CDS:CBG19814e CBG19814e   [unknown]
CDS:CBG19814d CBG19814d   [unknown]
CDS:CBG19814c CBG19814c   [unknown]

0 RNAi Result

35 Allele

Public Name
WBVar00139036
WBVar00139039
WBVar00139037
WBVar00139038
WBVar00001509
WBVar00001504
WBVar00001519
WBVar00001514
WBVar00001549
WBVar00001544
WBVar00001554
WBVar00001529
WBVar00001524
WBVar00001539
WBVar00001534
WBVar00001499
WBVar00127831
WBVar00127830
WBVar00127824
WBVar00127823
WBVar00127822
WBVar00127821
WBVar00127828
WBVar00127827
WBVar00127826
WBVar00127825
WBVar00127829
WBVar00127820
WBVar00127819
WBVar00127818

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG19820, GACAAGCGGCTGTTACCAGTTGGGAGAACTGGCTATGCGTTTTGGCAACCAATTTATCAC, WBGene00038978   Expr1070043 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG25427, GTCAAGATCACGAGGTGGTGGTGGTGGAGCGTCTTCTGGAAACGACTACAACAATTCAAT, WBGene00086841   Expr1056399 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-kin-1, CTTCTCAAACGAGCTCAAAGACTTGCTCAAGAACCTGCTCCAAGTGGATTTGACGAAACG, WBGene00038974   Expr1061372 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region