WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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Gene :

WormBase Gene ID  ? WBGene00039129 Gene Name  Cbr-fbl-1
Sequence Name  ? CBG20030 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calcium ion binding activity and peptidase activator activity. Predicted to be involved in extracellular matrix organization. Is an ortholog of C. elegans fbl-1. In C. elegans, fbl-1 is involved in extracellular matrix organization; positive regulation of locomotion; and protein localization. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20030c.1 CBG20030c.1   [unknown]
Transcript:CBG20030d.1 CBG20030d.1   [unknown]
Transcript:CBG20030a.1 CBG20030a.1   [unknown]
Transcript:CBG20030b.1 CBG20030b.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20030b CBG20030b   [unknown]
CDS:CBG20030a CBG20030a   [unknown]
CDS:CBG20030d CBG20030d   [unknown]
CDS:CBG20030c CBG20030c   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00009194
WBVar00128083
WBVar00128082
WBVar00128081
WBVar00128080
WBVar00128087
WBVar00128086
WBVar00128085
WBVar00128084
WBVar00128088
WBVar00128079
WBVar00128078
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0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-fbl-1, AAATACAAAGGGATCGTATTTGTGTCAATGTCCACCTGGTTATAAGATTCAACCCGATGG, WBGene00039129   Expr1060439 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables
  enables

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region