WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039237 Gene Name  CBG20196
Sequence Name  ? CBG20196 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable GTP binding activity and GTPase activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule-based process. Predicted to be located in microtubule. Is an ortholog of C. elegans tbb-2. In C. elegans, tbb-2 is involved in meiotic spindle organization. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20196b.1 CBG20196b.1   [unknown]
Transcript:CBG20196a.1 CBG20196a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20196b CBG20196b   [unknown]
CDS:CBG20196a CBG20196a   [unknown]

0 RNAi Result

5 Allele

Public Name
WBVar00049454
WBVar00049449
WBVar00049459
WBVar00049444
WBVar00128274

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tbb-2, GAGGCTGAGAGCAACATGAACGATCTCATCTCCGAGTACCAGCAATACCAGGAGGCCACC, WBGene00039237   Expr1053824 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  located_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region