WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039306 Gene Name  Cbr-usp-5
Sequence Name  ? CBG20283 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable cysteine-type deubiquitinase activity and zinc ion binding activity. Predicted to be involved in protein deubiquitination. Is an ortholog of C. elegans usp-5. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20283.1 CBG20283.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20283 CBG20283   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00128443
WBVar00128442
WBVar00128441
WBVar00128440
WBVar00128439
WBVar00128438
WBVar00128437
WBVar00128432
WBVar00128436
WBVar00128435
WBVar00128434
WBVar00128433

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG20283, CGAGAAGGTTGCTCTTTCTCAGGACCCACCAATCAAATTGGCCTACATTTATCTATACAA, WBGene00039306   Expr1051936 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region