WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039380 Gene Name  Cbr-casc-3
Sequence Name  ? CBG20393 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable mRNA binding activity. Predicted to be involved in mRNA processing. Predicted to be part of exon-exon junction complex. Is an ortholog of C. elegans casc-3. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20393.1 CBG20393.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20393 CBG20393   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00139264
WBVar00049949
WBVar00128601
WBVar00128613
WBVar00128612
WBVar00128611
WBVar00128610
WBVar00128605
WBVar00128604
WBVar00128603
WBVar00128602
WBVar00128609
WBVar00128608
WBVar00128607
WBVar00128606

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG20393, CCACCCCGGTCCAAGAAGGTCATCCCAATTGTGGACCCAAACAAGGCGGATCAGAAATAA, WBGene00039380   Expr1064867 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  part_of

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region