WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039894 Gene Name  CBG21007
Sequence Name  ? CBG21007 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans Y53F4B.12. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21007a.1 CBG21007a.1   [unknown]
Transcript:CBG21007b.1 CBG21007b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21007b CBG21007b   [unknown]
CDS:CBG21007a CBG21007a   [unknown]

0 RNAi Result

26 Allele

Public Name
WBVar00030037
WBVar00030042
WBVar00057554
WBVar00057559
WBVar00057544
WBVar00057549
WBVar00057564
WBVar00057569
WBVar00057574
WBVar00057539
WBVar00057534
WBVar00129261
WBVar00129262
WBVar00129263
WBVar00129264
WBVar00129260
WBVar00129265
WBVar00129266
WBVar00026109
WBVar00026114
WBVar00026119
WBVar00026124
WBVar00026129
WBVar00026134
WBVar00026139
WBVar00026144

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG21007, ACTACAACTCCCAAGAAGTTCATTTATTCGCCAATGAGGAACCTGAACTCCCCTTCTTTT, WBGene00039894   Expr1054503 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region