WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039901 Gene Name  Cbr-cyn-16
Sequence Name  ? CBG21016 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Is an ortholog of C. elegans cyn-16. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21016.2 CBG21016.2   [unknown]
Transcript:CBG21016.3 CBG21016.3   [unknown]
Transcript:CBG21016.1 CBG21016.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21016 CBG21016   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cyn-16, CAGTAGGATTGTCAAAGCAGGCGGCAGTAACTCGGGATGAGATGAGCAATTATTGTCCAG, WBGene00039901   Expr1062951 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region