WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039972 Gene Name  Cbr-mvk-1
Sequence Name  ? CBG21109 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity. Is an ortholog of C. elegans mvk-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

8 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21109a.1 CBG21109a.1   [unknown]
Transcript:CBG21109h.1 CBG21109h.1   [unknown]
Transcript:CBG21109f.1 CBG21109f.1   [unknown]
Transcript:CBG21109g.1 CBG21109g.1   [unknown]
Transcript:CBG21109d.1 CBG21109d.1   [unknown]
Transcript:CBG21109e.1 CBG21109e.1   [unknown]
Transcript:CBG21109b.1 CBG21109b.1   [unknown]
Transcript:CBG21109c.1 CBG21109c.1   [unknown]
 

Other

8 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21109a CBG21109a   [unknown]
CDS:CBG21109b CBG21109b   [unknown]
CDS:CBG21109c CBG21109c   [unknown]
CDS:CBG21109d CBG21109d   [unknown]
CDS:CBG21109e CBG21109e   [unknown]
CDS:CBG21109f CBG21109f   [unknown]
CDS:CBG21109g CBG21109g   [unknown]
CDS:CBG21109h CBG21109h   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00044052
WBVar00044047
WBVar00044062
WBVar00044057

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-mvk-1, AGCTATTCCAAACGCCCGTCTCATCGACTCAGTGCTCAACACCAGCGTCCAAACATAAAT, WBGene00039972   Expr1061674 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region