WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040018 Gene Name  Cbr-atp-2
Sequence Name  ? CBG21173 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity; ATP hydrolysis activity; and proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in proton motive force-driven ATP synthesis and proton transmembrane transport. Predicted to be part of proton-transporting ATP synthase complex, catalytic core F(1). Is an ortholog of C. elegans atp-2. In C. elegans, atp-2 is involved in several processes, including determination of adult lifespan; inductive cell migration; and nematode pharyngeal pumping. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21173a.1 CBG21173a.1   [unknown]
Transcript:CBG21173b.1 CBG21173b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21173a CBG21173a   [unknown]
CDS:CBG21173b CBG21173b   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00129431
WBVar00129430
WBVar00129433
WBVar00129432

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly increased at L4 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L4_vs_embryo_upregulated
  C.briggsae proteins that showed significantly increased at L1 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L1_vs_embryo_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-atp-2, GCAAGGAGGAATCGATGATGTGTTCAAGAAGGCCGAGGAGCTCGCCAAGCAACACAGCTA, WBGene00040018   Expr1056610 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

7 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  involved_in
  part_of

0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region