WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040130 Gene Name  Cbr-gars-1
Sequence Name  ? CBG21320 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and glycine-tRNA ligase activity. Predicted to be involved in glycyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Is an ortholog of C. elegans gars-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21320.1 CBG21320.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21320 CBG21320   [unknown]

0 RNAi Result

9 Allele

Public Name
WBVar00016074
WBVar00016059
WBVar00016044
WBVar00016079
WBVar00016064
WBVar00016049
WBVar00016069
WBVar00016054
WBVar00045369

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly decreased at L1 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L1_vs_embryo_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-gars-1, AAAGACCACTCCATACACTGTGACGATTCGCCACGCGGAGACAATGTCGCAGATTCGGCT, WBGene00040130   Expr1054367 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG21322, AATCTCCGTACATGCTTCGCCTCCGGATGCCTGTTTGTCGCCTACGAGGAAACCCGAAAA, WBGene00040131   Expr1053640 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

7 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region