WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040158 Gene Name  Cbr-lgc-45
Sequence Name  ? CBG21354 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-45. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21354.1 CBG21354.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21354 CBG21354   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00031067
WBVar00031052
WBVar00031037
WBVar00031057
WBVar00031042
WBVar00031062
WBVar00031047
WBVar00031032

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-lgc-45, GGGAAGTCCTCCTCCAGAAAGCAACCAGATACCACAAAACGGGACGATACTTGGATAACT, WBGene00040158   Expr1054896 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG21357, GATTCCAGAAGATTCAGAAGAGAGTGAGAAGCCGAAAATTGTTCTGGGCAGCGGAGGAGG, WBGene00040161   Expr1065441 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG21355, ACGTTGGATTATATCTACCAGGAATCTGTTCAGAATACGTCCCAAAAGCTATTGATGAGT, WBGene00040159   Expr1065963 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  located_in
  enables

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  located_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region