WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040164 Gene Name  Cbr-apd-3
Sequence Name  ? CBG21360 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be part of AP-3 adaptor complex. Is an ortholog of C. elegans apd-3. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21360.2 CBG21360.2   [unknown]
Transcript:CBG21360.1 CBG21360.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21360 CBG21360   [unknown]

0 RNAi Result

27 Allele

Public Name
WBVar00129855
WBVar00129854
WBVar00129856
WBVar00014239
WBVar00129831
WBVar00129833
WBVar00129832
WBVar00129835
WBVar00129834
WBVar00129837
WBVar00129836
WBVar00129839
WBVar00129838
WBVar00129841
WBVar00129840
WBVar00129843
WBVar00129842
WBVar00129845
WBVar00129844
WBVar00129847
WBVar00129846
WBVar00129849
WBVar00129848
WBVar00129851
WBVar00129850
WBVar00129853
WBVar00129852

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-apd-3, CAAAAGAGGCACCGAAGGCCGCGTCGTTGTTCGGACGAACTGTTGGCGGGCAGCCAATTT, WBGene00040164   Expr1050227 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  involved_in
  involved_in
  involved_in
  part_of
  part_of

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  involved_in
  involved_in
  part_of
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region