WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040358 Gene Name  Cbr-daf-15
Sequence Name  ? CBG21644 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in TOR signaling. Predicted to be part of TORC1 complex. Is an ortholog of C. elegans daf-15. In C. elegans, daf-15 is involved in dauer larval development; determination of adult lifespan; and regulation of autophagosome assembly. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21644a.1 CBG21644a.1   [unknown]
Transcript:CBG21644b.1 CBG21644b.1   [unknown]
Transcript:CBG21644c.1 CBG21644c.1   [unknown]
Transcript:CBG21644d.1 CBG21644d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21644a CBG21644a   [unknown]
CDS:CBG21644b CBG21644b   [unknown]
CDS:CBG21644c CBG21644c   [unknown]
CDS:CBG21644d CBG21644d   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-daf-15, GTCCACGATGACTCGAGAATCCTCGCATCAGCGTCAAGACAGCACGTGGCTATTTATGAT, WBGene00040358   Expr1064458 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region