WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040436 Gene Name  Cbr-bre-1
Sequence Name  ? CBG21737 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable GDP-mannose 4,6-dehydratase activity. Predicted to be involved in GDP-mannose metabolic process. Is an ortholog of C. elegans bre-1. In C. elegans, bre-1 is involved in GDP-L-fucose biosynthetic process; GDP-mannose metabolic process; and response to toxic substance. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21737a.1 CBG21737a.1   [unknown]
Transcript:CBG21737c.1 CBG21737c.1   [unknown]
Transcript:CBG21737b.1 CBG21737b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21737c CBG21737c   [unknown]
CDS:CBG21737b CBG21737b   [unknown]
CDS:CBG21737a CBG21737a   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00031957

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG21737, CTCGTTAAAGAGATGGTCGCCAGTGATATTGCACTCATGAAGGCCAACCCAATGGCTTAA, WBGene00040436   Expr1062172 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region